Where Ideas Grow

Introduction to Digital BioImage Analysis – 4th edition
 

26 September – 30 September 2022 | 9:30-17:30 | ONLINE COURSE

With the advent of the digital era, nowadays images are multidimensional numerical data that can be processed and analyzed quantitatively to extract more information. With this course, we intend to give a general introduction to ImageJ/Fiji (imagej.net/), show how to use it to extract quantitative data. Also, the design of typical workflows to automate image analysis will be addressed.
 Additionally, extra advanced topics will be available with scripting with macro language and image analysis with deep learning tools. 
This course will be focused on the analysis of light microscopy images but is targeted at all people engaged in research.

 

Target audience: All the scientific community with interest in the analysis of light microscopy images.

Course duration: Core: Introduction do digital BioImage Analysis (3 days - 20h); Module A: Batch processing: intro to macro language in Fiji (1 day - 6h); Module B: Deep learning tools (1 day - 6h); Full course (5 days - 32h)

Course language: English 

Requirements: Laptop with ImageJ/Fiji installed. No previous experience in the analysis of light microscopy images is required.

Certificate: The attendees must attend a minimum of 80% of the total duration selected in the registration form. 

Course Organizer: Mafalda Sousa, Advanced Light Microscopy, i3S

 

Poster >> 
 

Contents

Intro to Digital Image Analysis
Workflow of image analysis
Advanced ImageJ Plugins
Batch processing: introduction to macro language
Deep learning tools on image analyses

Speakers

Mafalda Sousa, Advanced Light Microscopy, i3S

Paula Sampaio, Advanced Light Microscopy, i3S

Others (to be confirmed)

Registration

The registration fee includes access to the course, course material, and certificate.
Limited number of participants: 30

 

Fees:

  Early registration | Until 20 June 2022 Late registration | Until 5 September 2022  
Core: Introduction do digital BioImage Analysis (3 days -20h) 180€  220€ i3S members
200€ 250€  External members
Module A: Batch processing: intro to macro language in Fiji
(29 September, 6h, Optional)
40€  50€  i3S members
50€  60€  External members
Module B: Deep learning tools (30 September, 6h, Optional) 40€  50€  i3S members
50€  60€  External members
Full course (5 days - 32h) 234€   288€  i3S members
270€  333€  External members

 

Pre-registration form >>

Please note that your pre-registration does not confirm that you have been selected for the course.
Payment will be requested only after confirmation of acceptance. Details for payment will be sent in the confirmation registration e-mail.
The organizer reserves the right to cancel the course in case of an insufficient number of participants or other unforeseeable events that render the execution of the course.
 

Sponsors

   

 


More Information:
Advanced Training Unit | E-mail: training@i3s.up.pt | Tel: +351 220 408 800